Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chr4:174392653-174392742	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:174389204..174391262-chr4:174392624..174394644,2	K562	blood:
2	chr4:174392536..174395058-chr4:174408602..174410950,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000261646	TF binding region
ENSG00000261646	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10004826	1.00[EUR][1000 genomes]
rs10010027	1.00[EUR][1000 genomes]
rs10026947	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13137653	1.00[EUR][1000 genomes]
rs1481119	1.00[EUR][1000 genomes]
rs28444875	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28623383	1.00[EUR][1000 genomes]
rs28664683	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28820378	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4695834	1.00[EUR][1000 genomes]
rs4696070	1.00[EUR][1000 genomes]
rs4696074	1.00[EUR][1000 genomes]
rs56989541	1.00[EUR][1000 genomes]
rs57940169	1.00[EUR][1000 genomes]
rs6848013	1.00[EUR][1000 genomes]
rs6848866	1.00[EUR][1000 genomes]
rs6852086	1.00[EUR][1000 genomes]
rs7675319	1.00[EUR][1000 genomes]
rs7687292	1.00[EUR][1000 genomes]
rs7690040	1.00[EUR][1000 genomes]
rs7695846	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461841	chr4:174330663-174423013	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv596233	chr4:174330663-174423013	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174370800-174398200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr4:174372000-174398200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:174382400-174407400	Weak transcription	Fetal Stomach	stomach
4	chr4:174382600-174393400	Weak transcription	Left Ventricle	heart
5	chr4:174383000-174399000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr4:174387600-174398200	Weak transcription	Aorta	Aorta
7	chr4:174387800-174399600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr4:174391200-174394800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr4:174392000-174393000	Weak transcription	H9 Cell Line	embryonic stem cell

Quick Search: