Variant report

Variant	rs10026947
Chromosome Location	chr4:174358331-174358332
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:174357856..174360203-chr4:174361297..174363935,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10004826	1.00[EUR][1000 genomes]
rs10010027	1.00[EUR][1000 genomes]
rs13137653	1.00[EUR][1000 genomes]
rs1481119	1.00[EUR][1000 genomes]
rs28444875	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28623383	1.00[EUR][1000 genomes]
rs28664683	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28820378	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4695834	1.00[EUR][1000 genomes]
rs4696070	1.00[EUR][1000 genomes]
rs4696074	1.00[EUR][1000 genomes]
rs56989541	1.00[EUR][1000 genomes]
rs57940169	1.00[EUR][1000 genomes]
rs6823255	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6848013	1.00[EUR][1000 genomes]
rs6848866	1.00[EUR][1000 genomes]
rs6852086	1.00[EUR][1000 genomes]
rs7675319	1.00[EUR][1000 genomes]
rs7687292	1.00[EUR][1000 genomes]
rs7690040	1.00[EUR][1000 genomes]
rs7695846	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461841	chr4:174330663-174423013	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv596233	chr4:174330663-174423013	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174334000-174368800	Weak transcription	Fetal Stomach	stomach
2	chr4:174337600-174366600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr4:174342200-174363400	Weak transcription	Brain Anterior Caudate	brain
4	chr4:174342200-174363800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr4:174342200-174369200	Weak transcription	Brain Angular Gyrus	brain
6	chr4:174348800-174361800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr4:174350200-174371400	Weak transcription	Right Ventricle	heart
8	chr4:174352600-174369200	Weak transcription	Ovary	ovary
9	chr4:174355000-174373600	Weak transcription	Esophagus	oesophagus
10	chr4:174356400-174358400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr4:174356400-174358600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr4:174356600-174358600	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr4:174356600-174365400	Weak transcription	Thymus	Thymus
14	chr4:174356600-174369000	Weak transcription	Brain Hippocampus Middle	brain
15	chr4:174356800-174358600	Enhancers	Colon Smooth Muscle	Colon
16	chr4:174356800-174359200	Enhancers	Rectal Smooth Muscle	rectum
17	chr4:174356800-174359200	Enhancers	HSMMtube	muscle
18	chr4:174356800-174359600	Weak transcription	Primary B cells from cord blood	blood
19	chr4:174356800-174362000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr4:174356800-174387400	Weak transcription	Primary hematopoietic stem cells	blood
21	chr4:174357000-174358400	Enhancers	NH-A	brain
22	chr4:174357000-174360000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr4:174357200-174358400	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr4:174357400-174358600	Enhancers	Fetal Heart	heart
25	chr4:174357400-174358600	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr4:174357600-174359200	Enhancers	Fetal Kidney	kidney
27	chr4:174357600-174360000	Weak transcription	Fetal Muscle Leg	muscle
28	chr4:174357600-174369800	Weak transcription	Adipose Nuclei	Adipose
29	chr4:174357800-174358400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr4:174357800-174358400	Enhancers	Osteobl	bone
31	chr4:174357800-174358600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr4:174357800-174363400	Weak transcription	Left Ventricle	heart
33	chr4:174357800-174368800	Weak transcription	Brain Cingulate Gyrus	brain
34	chr4:174358000-174358600	Enhancers	NHDF-Ad	bronchial
35	chr4:174358000-174359000	Enhancers	Stomach Smooth Muscle	stomach
36	chr4:174358200-174360000	Weak transcription	Aorta	Aorta
37	chr4:174358200-174369200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr4:174358200-174369400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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