Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:174233579..174235436-chr4:174347126..174349799,2	K562	blood:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10004826	1.00[EUR][1000 genomes]
rs10026947	1.00[EUR][1000 genomes]
rs10030028	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs13137653	1.00[CEU][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1481119	1.00[CEU][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28444875	1.00[EUR][1000 genomes]
rs28623383	1.00[EUR][1000 genomes]
rs28664683	1.00[EUR][1000 genomes]
rs28820378	1.00[EUR][1000 genomes]
rs4695834	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4696070	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4696074	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56989541	1.00[EUR][1000 genomes]
rs57940169	1.00[EUR][1000 genomes]
rs6823255	1.00[EUR][1000 genomes]
rs6848013	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6848866	1.00[EUR][1000 genomes]
rs6852086	1.00[CEU][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7655268	0.94[AFR][1000 genomes]
rs7675319	1.00[CEU][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7687292	1.00[CEU][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7690040	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7695846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461841	chr4:174330663-174423013	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv596233	chr4:174330663-174423013	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174331600-174357400	Weak transcription	Left Ventricle	heart
2	chr4:174333800-174354600	Weak transcription	Lung	lung
3	chr4:174333800-174357800	Weak transcription	Pancreas	Pancrea
4	chr4:174334000-174368800	Weak transcription	Fetal Stomach	stomach
5	chr4:174337600-174366600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr4:174339800-174352400	Weak transcription	Ovary	ovary
7	chr4:174341400-174354600	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr4:174342200-174363400	Weak transcription	Brain Anterior Caudate	brain
9	chr4:174342200-174363800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr4:174342200-174369200	Weak transcription	Brain Angular Gyrus	brain
11	chr4:174346800-174357200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr4:174347600-174356800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr4:174347600-174357400	Weak transcription	Aorta	Aorta
14	chr4:174348400-174356600	Weak transcription	NHDF-Ad	bronchial
15	chr4:174348800-174361800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr4:174349000-174354600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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