Variant report

Variant	rs28820378
Chromosome Location	chr4:174382557-174382558
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10004826	1.00[EUR][1000 genomes]
rs10010027	1.00[EUR][1000 genomes]
rs10026947	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13137653	1.00[EUR][1000 genomes]
rs1481119	1.00[EUR][1000 genomes]
rs28444875	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28623383	1.00[EUR][1000 genomes]
rs28664683	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4695834	1.00[EUR][1000 genomes]
rs4696070	1.00[EUR][1000 genomes]
rs4696074	1.00[EUR][1000 genomes]
rs56989541	1.00[EUR][1000 genomes]
rs57940169	1.00[EUR][1000 genomes]
rs6823255	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6848013	1.00[EUR][1000 genomes]
rs6848866	1.00[EUR][1000 genomes]
rs6852086	1.00[EUR][1000 genomes]
rs7675319	1.00[EUR][1000 genomes]
rs7687292	1.00[EUR][1000 genomes]
rs7690040	1.00[EUR][1000 genomes]
rs7695846	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461841	chr4:174330663-174423013	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv596233	chr4:174330663-174423013	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174356800-174387400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr4:174369600-174391400	Weak transcription	Pancreas	Pancrea
3	chr4:174370400-174389000	Weak transcription	Brain Anterior Caudate	brain
4	chr4:174370800-174387000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:174370800-174387000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr4:174370800-174398200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr4:174371000-174383000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr4:174371000-174385600	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr4:174371000-174387000	Weak transcription	Aorta	Aorta
10	chr4:174371000-174387200	Weak transcription	Rectal Smooth Muscle	rectum
11	chr4:174371000-174391400	Weak transcription	Brain Angular Gyrus	brain
12	chr4:174371000-174391400	Weak transcription	Brain Substantia Nigra	brain
13	chr4:174372000-174398200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr4:174375200-174387200	Weak transcription	Stomach Smooth Muscle	stomach
15	chr4:174378600-174382800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr4:174379400-174384400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr4:174380600-174387000	Weak transcription	Colon Smooth Muscle	Colon
18	chr4:174381800-174382600	Enhancers	Left Ventricle	heart
19	chr4:174381800-174383000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr4:174381800-174383000	Enhancers	K562	blood
21	chr4:174381800-174383400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr4:174381800-174383600	Weak transcription	Ovary	ovary
23	chr4:174381800-174383800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr4:174382200-174382600	Enhancers	HSMMtube	muscle
25	chr4:174382200-174382800	Enhancers	NH-A	brain
26	chr4:174382200-174391400	Weak transcription	Lung	lung
27	chr4:174382400-174382600	Flanking Active TSS	Fetal Heart	heart
28	chr4:174382400-174382800	Enhancers	Fetal Muscle Leg	muscle
29	chr4:174382400-174382800	Enhancers	HSMM	muscle
30	chr4:174382400-174407400	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links