Variant report

Variant	rs7675319
Chromosome Location	chr4:174344530-174344531
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr4:174344465-174344643	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
RPL5P11	TF binding region

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10004826	1.00[EUR][1000 genomes]
rs10010027	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10025290	1.00[CEU][hapmap]
rs10026947	1.00[EUR][1000 genomes]
rs13137653	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1481119	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs28444875	1.00[EUR][1000 genomes]
rs28623383	1.00[EUR][1000 genomes]
rs28664683	1.00[EUR][1000 genomes]
rs28820378	1.00[EUR][1000 genomes]
rs4695834	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4696070	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4696074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56989541	1.00[EUR][1000 genomes]
rs57940169	1.00[EUR][1000 genomes]
rs6553696	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6823255	1.00[EUR][1000 genomes]
rs6848013	1.00[EUR][1000 genomes]
rs6848866	1.00[EUR][1000 genomes]
rs6852086	1.00[CEU][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7687292	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7690040	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7695846	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461841	chr4:174330663-174423013	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv596233	chr4:174330663-174423013	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174320800-174347000	Weak transcription	Aorta	Aorta
2	chr4:174324600-174346200	Weak transcription	HSMMtube	muscle
3	chr4:174324800-174345600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr4:174331600-174346600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr4:174331600-174357400	Weak transcription	Left Ventricle	heart
6	chr4:174333800-174354600	Weak transcription	Lung	lung
7	chr4:174333800-174357800	Weak transcription	Pancreas	Pancrea
8	chr4:174334000-174368800	Weak transcription	Fetal Stomach	stomach
9	chr4:174336200-174346600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr4:174337000-174345600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr4:174337600-174366600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr4:174338200-174348600	Weak transcription	Brain Substantia Nigra	brain
13	chr4:174339800-174352400	Weak transcription	Ovary	ovary
14	chr4:174341400-174354600	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr4:174342000-174345600	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr4:174342000-174346400	Weak transcription	Stomach Smooth Muscle	stomach
17	chr4:174342000-174348400	Weak transcription	Brain Germinal Matrix	brain
18	chr4:174342200-174345000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr4:174342200-174345000	Weak transcription	Osteobl	bone
20	chr4:174342200-174345800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr4:174342200-174345800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr4:174342200-174346200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr4:174342200-174346200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr4:174342200-174346400	Weak transcription	Colon Smooth Muscle	Colon
25	chr4:174342200-174363400	Weak transcription	Brain Anterior Caudate	brain
26	chr4:174342200-174363800	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr4:174342200-174369200	Weak transcription	Brain Angular Gyrus	brain
28	chr4:174342400-174345000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr4:174342400-174345000	Weak transcription	NHDF-Ad	bronchial
30	chr4:174342400-174346000	Weak transcription	Primary T cells from cord blood	blood
31	chr4:174342600-174346000	Weak transcription	Dnd41	blood
32	chr4:174342800-174345200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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