Variant report

Variant	rs6553696
Chromosome Location	chr4:174340918-174340919
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:174249343..174251576-chr4:174340147..174342867,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000248774	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs4696074	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7675319	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7690040	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461841	chr4:174330663-174423013	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv596233	chr4:174330663-174423013	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv967814	chr4:174339447-174341974	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174294200-174341600	Weak transcription	Fetal Intestine Small	intestine
2	chr4:174294800-174341800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr4:174319600-174341800	Weak transcription	NHDF-Ad	bronchial
4	chr4:174320800-174347000	Weak transcription	Aorta	Aorta
5	chr4:174321000-174341800	Weak transcription	Colon Smooth Muscle	Colon
6	chr4:174321000-174341800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr4:174324600-174346200	Weak transcription	HSMMtube	muscle
8	chr4:174324800-174345600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr4:174325800-174341800	Weak transcription	Brain Germinal Matrix	brain
10	chr4:174327400-174341600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr4:174331600-174341200	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr4:174331600-174346600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr4:174331600-174357400	Weak transcription	Left Ventricle	heart
14	chr4:174333800-174354600	Weak transcription	Lung	lung
15	chr4:174333800-174357800	Weak transcription	Pancreas	Pancrea
16	chr4:174334000-174368800	Weak transcription	Fetal Stomach	stomach
17	chr4:174334600-174341600	Weak transcription	Dnd41	blood
18	chr4:174335800-174341600	Weak transcription	Stomach Smooth Muscle	stomach
19	chr4:174336000-174341800	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr4:174336200-174346600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr4:174336400-174341600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr4:174337000-174345600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr4:174337600-174341600	Weak transcription	Brain Hippocampus Middle	brain
24	chr4:174337600-174366600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr4:174338000-174341400	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr4:174338200-174341600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr4:174338200-174341800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr4:174338200-174348600	Weak transcription	Brain Substantia Nigra	brain
29	chr4:174338400-174341600	Weak transcription	Brain Cingulate Gyrus	brain
30	chr4:174338400-174341600	Weak transcription	Fetal Lung	lung
31	chr4:174338400-174341800	Weak transcription	Fetal Brain Male	brain
32	chr4:174338600-174341400	Enhancers	Monocytes-CD14+_RO01746	blood
33	chr4:174338600-174341600	Weak transcription	Brain Angular Gyrus	brain
34	chr4:174338600-174341600	Weak transcription	Brain Anterior Caudate	brain
35	chr4:174338600-174341600	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr4:174338600-174341600	Weak transcription	Osteobl	bone
37	chr4:174339800-174341600	Weak transcription	Stomach Mucosa	stomach
38	chr4:174339800-174352400	Weak transcription	Ovary	ovary
39	chr4:174340200-174342200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr4:174340600-174341600	Weak transcription	HUVEC	blood vessel
41	chr4:174340600-174341800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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