Variant report

Variant	rs4696074
Chromosome Location	chr4:174346565-174346566
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:174337554..174339082-chr4:174346381..174348146,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10004826	1.00[EUR][1000 genomes]
rs10010027	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10026947	1.00[EUR][1000 genomes]
rs13137653	1.00[CEU][hapmap];0.82[LWK][hapmap];1.00[EUR][1000 genomes]
rs1481119	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs28444875	1.00[EUR][1000 genomes]
rs28623383	1.00[EUR][1000 genomes]
rs28664683	1.00[EUR][1000 genomes]
rs28820378	1.00[EUR][1000 genomes]
rs4695834	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4696070	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs56989541	1.00[EUR][1000 genomes]
rs57940169	1.00[EUR][1000 genomes]
rs6553696	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6823255	1.00[EUR][1000 genomes]
rs6848013	1.00[EUR][1000 genomes]
rs6848866	1.00[EUR][1000 genomes]
rs6852086	1.00[CEU][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7675319	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7687292	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7690040	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7695846	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461841	chr4:174330663-174423013	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv596233	chr4:174330663-174423013	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174320800-174347000	Weak transcription	Aorta	Aorta
2	chr4:174331600-174346600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr4:174331600-174357400	Weak transcription	Left Ventricle	heart
4	chr4:174333800-174354600	Weak transcription	Lung	lung
5	chr4:174333800-174357800	Weak transcription	Pancreas	Pancrea
6	chr4:174334000-174368800	Weak transcription	Fetal Stomach	stomach
7	chr4:174336200-174346600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr4:174337600-174366600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr4:174338200-174348600	Weak transcription	Brain Substantia Nigra	brain
10	chr4:174339800-174352400	Weak transcription	Ovary	ovary
11	chr4:174341400-174354600	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr4:174342000-174348400	Weak transcription	Brain Germinal Matrix	brain
13	chr4:174342200-174363400	Weak transcription	Brain Anterior Caudate	brain
14	chr4:174342200-174363800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr4:174342200-174369200	Weak transcription	Brain Angular Gyrus	brain
16	chr4:174345000-174348400	Enhancers	NHDF-Ad	bronchial
17	chr4:174345000-174348400	Enhancers	Osteobl	bone
18	chr4:174345200-174349000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr4:174345400-174348400	Enhancers	NHLF	lung
20	chr4:174345600-174346600	Enhancers	HSMM	muscle
21	chr4:174345600-174347200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr4:174345600-174347400	Enhancers	Muscle Satellite Cultured Cells	--
23	chr4:174345600-174347800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr4:174345600-174348000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr4:174345600-174348400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr4:174345600-174348400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr4:174345800-174347600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr4:174345800-174348400	Enhancers	Primary T cells fromperipheralblood	blood
29	chr4:174345800-174348800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr4:174346000-174347000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr4:174346000-174347000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr4:174346000-174348400	Enhancers	Dnd41	blood
33	chr4:174346000-174348800	Enhancers	Primary T cells from cord blood	blood
34	chr4:174346200-174346600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr4:174346200-174346800	Enhancers	HMEC	breast
36	chr4:174346200-174347000	Enhancers	HSMMtube	muscle
37	chr4:174346200-174347200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr4:174346200-174347200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr4:174346200-174347200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr4:174346200-174348400	Enhancers	Primary T helper cells PMA-I stimulated	--
41	chr4:174346200-174348400	Enhancers	Primary T helper cells fromperipheralblood	blood
42	chr4:174346200-174348400	Enhancers	Primary T killer memory cells from peripheral blood	blood
43	chr4:174346200-174348800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
44	chr4:174346400-174346600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr4:174346400-174346800	Enhancers	Stomach Smooth Muscle	stomach
46	chr4:174346400-174346800	Flanking Active TSS	NH-A	brain
47	chr4:174346400-174347200	Enhancers	Colon Smooth Muscle	Colon
48	chr4:174346400-174348000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
49	chr4:174346400-174348800	Enhancers	Primary T helper naive cells from peripheral blood	blood

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