Variant report

Variant	rs10030734
Chromosome Location	chr4:47078095-47078096
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10029672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13112698	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13144187	0.84[ASN][1000 genomes]
rs13146233	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3775536	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4487315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58533909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6854637	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7663591	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv537078	chr4:47059778-47137372	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47071800-47086600	Weak transcription	Fetal Lung	lung
2	chr4:47072600-47079200	Enhancers	Hela-S3	cervix
3	chr4:47074600-47078400	Enhancers	NH-A	brain
4	chr4:47074600-47079000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr4:47075600-47078200	Weak transcription	Brain Angular Gyrus	brain
6	chr4:47075600-47078200	Weak transcription	Brain Substantia Nigra	brain
7	chr4:47076600-47078400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr4:47076600-47078400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr4:47076600-47078600	Enhancers	HUVEC	blood vessel
10	chr4:47077000-47078200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr4:47077000-47078200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr4:47077000-47078200	Enhancers	Fetal Stomach	stomach
13	chr4:47077000-47079400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr4:47077400-47078200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr4:47077400-47078400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr4:47077400-47078600	Enhancers	Fetal Muscle Leg	muscle
17	chr4:47077800-47078200	Enhancers	NHLF	lung
18	chr4:47077800-47078200	Enhancers	Osteobl	bone
19	chr4:47077800-47078600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr4:47077800-47078800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr4:47077800-47079200	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr4:47077800-47079400	Enhancers	Brain Hippocampus Middle	brain
23	chr4:47077800-47079600	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr4:47077800-47079600	Enhancers	Brain Cingulate Gyrus	brain
25	chr4:47078000-47078400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr4:47078000-47078400	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr4:47078000-47078600	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr4:47078000-47078600	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr4:47078000-47078800	Flanking Active TSS	Brain Anterior Caudate	brain
30	chr4:47078000-47079000	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr4:47078000-47079200	Enhancers	Fetal Brain Female	brain
32	chr4:47078000-47079400	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr4:47078000-47079400	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr4:47078000-47079400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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