Variant report

Variant	rs6854637
Chromosome Location	chr4:47098719-47098720
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10002281	0.91[LWK][hapmap]
rs10011608	1.00[YRI][hapmap]
rs10025590	0.85[YRI][hapmap]
rs10029672	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10030734	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10517178	0.85[ASW][hapmap]
rs10517179	0.81[LWK][hapmap];0.96[YRI][hapmap]
rs12640095	0.88[LWK][hapmap];0.88[YRI][hapmap]
rs12645665	0.88[LWK][hapmap];0.87[YRI][hapmap]
rs13112698	0.85[CEU][hapmap];0.91[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13117312	1.00[CEU][hapmap]
rs13146233	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1372491	0.85[ASW][hapmap]
rs17600029	0.88[LWK][hapmap]
rs1946966	0.81[YRI][hapmap]
rs2351299	0.88[LWK][hapmap];0.88[YRI][hapmap]
rs2351300	0.88[LWK][hapmap]
rs28595484	0.97[AFR][1000 genomes]
rs3775536	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4487315	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58533909	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6852985	0.85[ASW][hapmap]
rs7435958	0.88[LWK][hapmap]
rs7663591	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9291303	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv537078	chr4:47059778-47137372	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv829922	chr4:47093785-47261181	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47091000-47100400	Weak transcription	Brain Angular Gyrus	brain

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