Variant report

Variant	rs10517178
Chromosome Location	chr4:47102993-47102994
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:47102874..47105061-chr4:47116101..47117878,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10025590	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10034943	0.83[AFR][1000 genomes]
rs10517179	0.87[CHD][hapmap]
rs10938472	1.00[CEU][hapmap];0.90[MEX][hapmap];0.86[TSI][hapmap]
rs13102561	1.00[CEU][hapmap]
rs13108870	0.82[CEU][hapmap];0.80[EUR][1000 genomes]
rs13140672	1.00[CEU][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1372490	0.93[YRI][hapmap]
rs1372491	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap]
rs1442103	1.00[CEU][hapmap];0.90[MEX][hapmap];0.91[TSI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1470207	0.93[YRI][hapmap];0.81[AFR][1000 genomes]
rs1596138	0.88[LWK][hapmap];0.87[MKK][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes]
rs17539014	1.00[CEU][hapmap]
rs34541375	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34552901	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34926350	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35839630	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs36002778	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3775536	0.85[ASW][hapmap]
rs4694835	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4695191	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62305289	0.81[EUR][1000 genomes]
rs6447532	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6818828	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6824046	0.80[AFR][1000 genomes]
rs6852985	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap]
rs6854637	0.85[ASW][hapmap]
rs7663591	0.85[ASW][hapmap]
rs7686292	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7696916	1.00[CEU][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv537078	chr4:47059778-47137372	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv829922	chr4:47093785-47261181	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv879003	chr4:47102993-47215939	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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