Variant report

Variant	rs13108870
Chromosome Location	chr4:47075557-47075558
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10025590	0.82[CEU][hapmap]
rs10517178	0.82[CEU][hapmap]
rs10938472	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs13102561	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs13116355	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13140672	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1372491	0.82[CEU][hapmap]
rs1442103	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs16859782	1.00[JPT][hapmap]
rs17539014	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs34429439	0.91[ASN][1000 genomes]
rs34541375	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34552901	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34926350	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35839630	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs36002778	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4694835	0.80[EUR][1000 genomes]
rs4695191	0.80[EUR][1000 genomes]
rs62305281	0.91[ASN][1000 genomes]
rs62305283	0.91[ASN][1000 genomes]
rs62305289	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6447532	0.82[CEU][hapmap];0.80[EUR][1000 genomes]
rs6818828	0.82[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6852985	0.82[CEU][hapmap]
rs7686292	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7696916	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv537078	chr4:47059778-47137372	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47054600-47075600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr4:47067600-47076800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr4:47068200-47078000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr4:47071800-47086600	Weak transcription	Fetal Lung	lung
5	chr4:47072600-47079200	Enhancers	Hela-S3	cervix
6	chr4:47073200-47075800	Enhancers	HUVEC	blood vessel
7	chr4:47073400-47076000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr4:47074600-47076400	Weak transcription	Osteobl	bone
9	chr4:47074600-47076600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr4:47074600-47076600	Weak transcription	Brain Anterior Caudate	brain
11	chr4:47074600-47077000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr4:47074600-47077000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr4:47074600-47077400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr4:47074600-47078400	Enhancers	NH-A	brain
15	chr4:47074600-47079000	Enhancers	Muscle Satellite Cultured Cells	--
16	chr4:47074800-47075600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr4:47075000-47075600	Enhancers	Brain Angular Gyrus	brain
18	chr4:47075200-47075800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr4:47075200-47076200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr4:47075400-47075600	Enhancers	Brain Substantia Nigra	brain

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