Variant report

Variant	rs34541375
Chromosome Location	chr4:47083601-47083602
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13108870	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13140672	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1442103	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34429439	0.91[ASN][1000 genomes]
rs34552901	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34926350	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35839630	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs36002778	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4694835	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4695191	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62305281	0.91[ASN][1000 genomes]
rs62305283	0.91[ASN][1000 genomes]
rs62305289	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6447532	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6818828	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7686292	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv537078	chr4:47059778-47137372	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47071800-47086600	Weak transcription	Fetal Lung	lung
2	chr4:47079000-47090200	Weak transcription	Brain Substantia Nigra	brain
3	chr4:47079200-47090400	Weak transcription	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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