Variant report

Variant	rs34429439
Chromosome Location	chr4:47053833-47053834
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13108870	0.91[ASN][1000 genomes]
rs13116355	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13139454	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34541375	0.91[ASN][1000 genomes]
rs62303743	0.94[EUR][1000 genomes]
rs62303745	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62305281	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62305283	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62305289	0.91[ASN][1000 genomes]
rs7686292	0.91[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47051200-47057800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:47051400-47054800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr4:47051600-47054600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:47052600-47054600	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr4:47052800-47054000	Enhancers	Brain Cingulate Gyrus	brain
6	chr4:47052800-47054400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr4:47052800-47054400	Enhancers	Brain Hippocampus Middle	brain
8	chr4:47053200-47054200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr4:47053200-47054600	Enhancers	Brain Anterior Caudate	brain
10	chr4:47053600-47061800	Weak transcription	Brain Angular Gyrus	brain
11	chr4:47053800-47054400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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