Variant report

Variant	rs34926350
Chromosome Location	chr4:47089424-47089425
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10938472	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13108870	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13140672	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1442103	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34541375	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34552901	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35839630	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36002778	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4694835	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4695191	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62305289	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6447532	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6818828	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7686292	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv537078	chr4:47059778-47137372	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv967290	chr4:47085214-47095748	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47079000-47090200	Weak transcription	Brain Substantia Nigra	brain
2	chr4:47079200-47090400	Weak transcription	Brain Angular Gyrus	brain
3	chr4:47088000-47090200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr4:47088000-47090400	Weak transcription	Brain Anterior Caudate	brain
5	chr4:47089000-47090600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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