Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10025590	1.00[CEU][hapmap]
rs10517178	1.00[CEU][hapmap];0.90[MEX][hapmap];0.91[TSI][hapmap]
rs10938472	1.00[CEU][hapmap];0.97[GIH][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13102561	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs13108870	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs13140672	1.00[ASW][hapmap];1.00[CEU][hapmap];0.97[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1372491	1.00[CEU][hapmap];0.90[MEX][hapmap];0.91[TSI][hapmap]
rs17539014	1.00[CEU][hapmap]
rs34541375	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34552901	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34926350	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35839630	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs36002778	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4694835	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4695191	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62305289	0.85[EUR][1000 genomes]
rs6447532	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6818828	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6852985	1.00[CEU][hapmap];0.90[MEX][hapmap];0.91[TSI][hapmap]
rs7686292	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7696916	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv537078	chr4:47059778-47137372	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv829922	chr4:47093785-47261181	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv879003	chr4:47102993-47215939	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1442103	FRYL	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47114400-47120600	Weak transcription	Fetal Lung	lung
2	chr4:47115200-47120600	Weak transcription	Fetal Brain Male	brain
3	chr4:47118000-47119000	Enhancers	Fetal Heart	heart

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