Variant report

Variant	rs13140672
Chromosome Location	chr4:47090407-47090408
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10025590	1.00[CEU][hapmap]
rs10517178	1.00[CEU][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap]
rs10938472	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13102561	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13108870	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13116355	1.00[YRI][hapmap]
rs1372491	1.00[CEU][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap]
rs1442103	1.00[ASW][hapmap];1.00[CEU][hapmap];0.97[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17539014	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs34541375	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34552901	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34926350	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35839630	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36002778	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4694835	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4695191	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62305289	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6447532	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6818828	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6852985	1.00[CEU][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap]
rs7686292	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7696916	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv537078	chr4:47059778-47137372	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv967290	chr4:47085214-47095748	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47089000-47090600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr4:47089600-47090600	Enhancers	Osteobl	bone
3	chr4:47090200-47090800	Enhancers	Brain Cingulate Gyrus	brain
4	chr4:47090200-47091000	Enhancers	Brain Hippocampus Middle	brain
5	chr4:47090200-47091000	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr4:47090200-47091000	Enhancers	Brain Substantia Nigra	brain
7	chr4:47090400-47091000	Enhancers	Brain Angular Gyrus	brain
8	chr4:47090400-47091400	Enhancers	Brain Anterior Caudate	brain
9	chr4:47090400-47091600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links