Variant report

Variant	rs58533909
Chromosome Location	chr4:47073257-47073258
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10029672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10030734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13112698	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13144187	0.84[ASN][1000 genomes]
rs13146233	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3775536	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4487315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6854637	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7663591	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv537078	chr4:47059778-47137372	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47054600-47075600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr4:47067600-47076800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr4:47068200-47078000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr4:47069400-47073400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:47069400-47073400	Weak transcription	Brain Anterior Caudate	brain
6	chr4:47071800-47073400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr4:47071800-47073600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr4:47071800-47086600	Weak transcription	Fetal Lung	lung
9	chr4:47072600-47079200	Enhancers	Hela-S3	cervix
10	chr4:47073000-47074200	Enhancers	NH-A	brain
11	chr4:47073200-47073600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr4:47073200-47074200	Enhancers	Muscle Satellite Cultured Cells	--
13	chr4:47073200-47074600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr4:47073200-47074600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr4:47073200-47074600	Enhancers	Osteobl	bone
16	chr4:47073200-47074800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr4:47073200-47075800	Enhancers	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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