Variant report
| Variant | rs1946966 |
|---|---|
| Chromosome Location | chr4:47137476-47137477 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10011608 | 0.81[YRI][hapmap] |
| rs10025590 | 0.88[YRI][hapmap] |
| rs10034943 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11730134 | 0.83[ASN][1000 genomes] |
| rs12640095 | 0.97[CHD][hapmap];0.82[JPT][hapmap];0.85[YRI][hapmap];0.85[ASN][1000 genomes] |
| rs12645665 | 0.97[CHD][hapmap];0.82[JPT][hapmap];0.84[YRI][hapmap] |
| rs1372490 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap] |
| rs1372491 | 0.81[LWK][hapmap] |
| rs1470207 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1561778 | 0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1596138 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2351299 | 0.94[CHD][hapmap];0.82[JPT][hapmap];0.85[YRI][hapmap] |
| rs2882620 | 0.82[CEU][hapmap] |
| rs3775536 | 0.81[YRI][hapmap] |
| rs4463042 | 0.85[ASN][1000 genomes] |
| rs67848491 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6824046 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6854637 | 0.81[YRI][hapmap] |
| rs7663591 | 0.81[YRI][hapmap] |
| rs9291303 | 0.81[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv829922 | chr4:47093785-47261181 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 2 | nsv879003 | chr4:47102993-47215939 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs1946966 | KCTD8 | cis | cerebellum | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
