Variant report

Variant	rs10034037
Chromosome Location	chr4:166504510-166504511
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10007309	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10019450	0.83[AFR][1000 genomes]
rs10022357	0.83[AFR][1000 genomes]
rs10030842	0.80[AFR][1000 genomes]
rs10212735	0.86[AFR][1000 genomes]
rs10213568	0.83[AMR][1000 genomes]
rs1380354	0.83[AFR][1000 genomes]
rs17046759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17046823	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17046830	0.83[AFR][1000 genomes]
rs17046855	0.85[AFR][1000 genomes]
rs28372658	0.83[AFR][1000 genomes]
rs28537958	0.83[AFR][1000 genomes]
rs28566641	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28725290	0.85[AFR][1000 genomes]
rs28760332	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28781697	0.86[AFR][1000 genomes]
rs28829895	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9308112	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830141	chr4:166502908-166689626	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166500600-166504800	Enhancers	HMEC	breast
2	chr4:166502000-166509000	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:166502200-166504600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr4:166502400-166504600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr4:166502800-166508600	Weak transcription	Fetal Heart	heart
6	chr4:166503000-166504800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr4:166503000-166523800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:166504000-166504600	Enhancers	NHEK	skin
9	chr4:166504400-166504800	Enhancers	HUVEC	blood vessel
10	chr4:166504400-166507200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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