Variant report

Variant	rs28829895
Chromosome Location	chr4:166540601-166540602
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10007309	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10019450	0.85[AFR][1000 genomes]
rs10022357	0.85[AFR][1000 genomes]
rs10030842	0.82[AFR][1000 genomes]
rs10034037	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10212735	0.88[AFR][1000 genomes]
rs10213568	0.83[AMR][1000 genomes]
rs1380354	0.85[AFR][1000 genomes]
rs17046759	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17046823	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17046830	0.85[AFR][1000 genomes]
rs17046855	0.86[AFR][1000 genomes]
rs28372658	0.85[AFR][1000 genomes]
rs28537958	0.85[AFR][1000 genomes]
rs28566641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28725290	0.86[AFR][1000 genomes]
rs28760332	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28781697	0.88[AFR][1000 genomes]
rs9308112	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830141	chr4:166502908-166689626	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166535000-166542600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr4:166538400-166543000	Weak transcription	HMEC	breast
3	chr4:166539800-166543000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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