Variant report

Variant	rs9308112
Chromosome Location	chr4:166534220-166534221
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10007309	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10019450	0.86[AFR][1000 genomes]
rs10022357	0.86[AFR][1000 genomes]
rs10030842	0.84[AFR][1000 genomes]
rs10034037	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10212735	0.90[AFR][1000 genomes]
rs10213568	0.83[AMR][1000 genomes]
rs1380354	0.86[AFR][1000 genomes]
rs17046759	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17046823	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17046830	0.86[AFR][1000 genomes]
rs17046855	0.88[AFR][1000 genomes]
rs28372658	0.86[AFR][1000 genomes]
rs28537958	0.86[AFR][1000 genomes]
rs28566641	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28725290	0.88[AFR][1000 genomes]
rs28760332	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28781697	0.90[AFR][1000 genomes]
rs28829895	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830141	chr4:166502908-166689626	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166525600-166539200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:166530400-166536000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:166530600-166535400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr4:166530800-166535200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:166531600-166536000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:166532000-166534400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr4:166532200-166534800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr4:166533400-166534400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr4:166533400-166534800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr4:166533400-166534800	Enhancers	Fetal Kidney	kidney
11	chr4:166533400-166535000	Enhancers	Primary hematopoietic stem cells	blood
12	chr4:166533400-166535000	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr4:166533400-166537000	Weak transcription	Fetal Brain Male	brain
14	chr4:166533600-166534400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr4:166533600-166534400	Enhancers	Fetal Muscle Leg	muscle
16	chr4:166533600-166534600	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr4:166533600-166534600	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr4:166533600-166535000	Enhancers	Fetal Stomach	stomach
19	chr4:166533600-166535000	Enhancers	Rectal Smooth Muscle	rectum
20	chr4:166533800-166534400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr4:166533800-166534600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr4:166534000-166534400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr4:166534000-166534400	Enhancers	GM12878-XiMat	blood
24	chr4:166534000-166534800	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr4:166534200-166534800	Enhancers	H9 Cell Line	embryonic stem cell
26	chr4:166534200-166535200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr4:166534200-166535800	Enhancers	Colon Smooth Muscle	Colon

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