Variant report

Variant	rs10035036
Chromosome Location	chr4:175639251-175639252
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10035078	1.00[AMR][1000 genomes]
rs12641133	1.00[AMR][1000 genomes]
rs4498113	1.00[AMR][1000 genomes]
rs4549357	1.00[AMR][1000 genomes]
rs4558847	1.00[AMR][1000 genomes]
rs4611902	0.92[YRI][hapmap];1.00[AMR][1000 genomes]
rs4695783	1.00[AMR][1000 genomes]
rs4695951	1.00[AMR][1000 genomes]
rs6812439	1.00[AMR][1000 genomes]
rs6845911	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1018390	chr4:175475505-175969742	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv880584	chr4:175505749-175644689	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175638400-175639400	Enhancers	Rectal Smooth Muscle	rectum
2	chr4:175638600-175639400	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr4:175638600-175639800	Enhancers	Adipose Nuclei	Adipose
4	chr4:175638600-175640000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:175639000-175639600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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