Variant report

Variant	rs4695783
Chromosome Location	chr4:175593695-175593696
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10035036	1.00[AMR][1000 genomes]
rs10035078	1.00[AMR][1000 genomes]
rs12641133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4498113	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4530608	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs4549357	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4558847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4611902	1.00[AMR][1000 genomes]
rs4695951	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6812439	1.00[ASW][hapmap];0.89[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6845911	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1018390	chr4:175475505-175969742	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv880584	chr4:175505749-175644689	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175590200-175595000	Weak transcription	Fetal Intestine Small	intestine
2	chr4:175591000-175595400	Weak transcription	Hela-S3	cervix
3	chr4:175591800-175595200	Weak transcription	Fetal Intestine Large	intestine
4	chr4:175593000-175594200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:175593000-175594200	Enhancers	K562	blood
6	chr4:175593200-175594000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:175593400-175593800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr4:175593400-175593800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:175593400-175593800	Flanking Active TSS	A549	lung
10	chr4:175593600-175593800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr4:175593600-175593800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr4:175593600-175594000	Enhancers	Stomach Mucosa	stomach
13	chr4:175593600-175594000	Enhancers	HMEC	breast
14	chr4:175593600-175594000	Enhancers	NHEK	skin
15	chr4:175593600-175594200	Enhancers	Breast Myoepithelial Primary Cells	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links