Variant report

Variant	rs10035100
Chromosome Location	chr5:164561712-164561713
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10037230	1.00[AMR][1000 genomes]
rs10037575	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10043842	1.00[AMR][1000 genomes]
rs10054706	1.00[AMR][1000 genomes]
rs10060042	1.00[AMR][1000 genomes]
rs10062433	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10063840	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10069935	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10476487	1.00[AMR][1000 genomes]
rs10476501	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10476502	1.00[AMR][1000 genomes]
rs11948456	1.00[AMR][1000 genomes]
rs13358092	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13358572	0.92[YRI][hapmap];1.00[AMR][1000 genomes]
rs13359673	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13362213	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13436508	1.00[AMR][1000 genomes]
rs58732459	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73335559	1.00[AMR][1000 genomes]
rs73341957	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73344107	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73344179	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73344183	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73344185	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73344194	1.00[AMR][1000 genomes]
rs73346372	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995060	chr5:163660200-164620500	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv528624	chr5:164319435-164701201	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1033866	chr5:164419608-164677758	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:164557800-164562200	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr5:164557800-164562600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr5:164557800-164565000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr5:164557800-164570800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr5:164558000-164564800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr5:164558200-164564800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr5:164558200-164565000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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