Variant report

Variant	rs11948456
Chromosome Location	chr5:164662127-164662128
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10035100	1.00[AMR][1000 genomes]
rs10037230	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10037575	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10043842	1.00[AMR][1000 genomes]
rs10054706	1.00[AMR][1000 genomes]
rs10060042	1.00[AMR][1000 genomes]
rs10062433	1.00[AMR][1000 genomes]
rs10063840	1.00[AMR][1000 genomes]
rs10069935	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10476501	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10476502	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13358092	1.00[AMR][1000 genomes]
rs13358572	1.00[ASW][hapmap];0.88[LWK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13359673	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13362213	1.00[AMR][1000 genomes]
rs13436508	1.00[AMR][1000 genomes]
rs58732459	1.00[AMR][1000 genomes]
rs73335559	1.00[AMR][1000 genomes]
rs73341957	1.00[AMR][1000 genomes]
rs73344107	1.00[AMR][1000 genomes]
rs73344179	1.00[AMR][1000 genomes]
rs73344183	1.00[AMR][1000 genomes]
rs73344185	1.00[AMR][1000 genomes]
rs73344194	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528624	chr5:164319435-164701201	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033866	chr5:164419608-164677758	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1027138	chr5:164563093-164852655	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv537937	chr5:164563093-164852655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1028006	chr5:164563293-164852516	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv537938	chr5:164563293-164852516	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1027103	chr5:164606534-164694498	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:164659400-164662400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:164660800-164662400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
3	chr5:164661600-164662400	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell

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