Variant report

Variant	rs10060042
Chromosome Location	chr5:164510228-164510229
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10035100	1.00[AMR][1000 genomes]
rs10037230	1.00[AMR][1000 genomes]
rs10037575	1.00[AMR][1000 genomes]
rs10043842	1.00[AMR][1000 genomes]
rs10054706	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10062433	1.00[AMR][1000 genomes]
rs10063840	1.00[AMR][1000 genomes]
rs10069935	1.00[AMR][1000 genomes]
rs10476487	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10476501	1.00[AMR][1000 genomes]
rs10476502	1.00[AMR][1000 genomes]
rs11948456	1.00[AMR][1000 genomes]
rs13358092	1.00[AMR][1000 genomes]
rs13358572	1.00[AMR][1000 genomes]
rs13359673	1.00[AMR][1000 genomes]
rs13362213	1.00[AMR][1000 genomes]
rs13436508	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58732459	1.00[AMR][1000 genomes]
rs73335559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73341957	1.00[AMR][1000 genomes]
rs73344107	1.00[AMR][1000 genomes]
rs73344179	1.00[AMR][1000 genomes]
rs73344183	1.00[AMR][1000 genomes]
rs73344185	1.00[AMR][1000 genomes]
rs73344194	1.00[AMR][1000 genomes]
rs73346372	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995060	chr5:163660200-164620500	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv528624	chr5:164319435-164701201	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1033866	chr5:164419608-164677758	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv883092	chr5:164443094-164529549	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1031772	chr5:164451602-164512911	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:164510200-164512600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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