Variant report

Variant	rs10036638
Chromosome Location	chr5:152014671-152014672
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:152014610..152016353-chr5:152016707..152018951,3	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10036955	1.00[AMR][1000 genomes]
rs10037723	1.00[AMR][1000 genomes]
rs10042517	1.00[AMR][1000 genomes]
rs10056536	1.00[AMR][1000 genomes]
rs10062210	1.00[AMR][1000 genomes]
rs10065883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10066577	1.00[AMR][1000 genomes]
rs11950689	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11956531	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28407304	1.00[AMR][1000 genomes]
rs28730269	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023676	chr5:151979253-152925064	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv537927	chr5:151979253-152925064	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv5074	chr5:152010691-152055779	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:152008400-152022800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:152009000-152016800	Enhancers	Fetal Brain Female	brain
3	chr5:152011800-152021800	Weak transcription	Aorta	Aorta
4	chr5:152012200-152014800	Enhancers	Fetal Brain Male	brain
5	chr5:152012800-152018000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr5:152013400-152015000	Enhancers	Brain Hippocampus Middle	brain
7	chr5:152013400-152015200	Enhancers	Brain Germinal Matrix	brain
8	chr5:152013400-152015400	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr5:152013600-152014800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:152013600-152015000	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr5:152013600-152015400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr5:152013600-152018400	Weak transcription	Fetal Lung	lung
13	chr5:152013800-152014800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr5:152013800-152014800	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr5:152013800-152014800	Enhancers	Brain Anterior Caudate	brain
16	chr5:152013800-152015000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr5:152013800-152015000	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr5:152013800-152015200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr5:152014000-152014800	Enhancers	Brain Angular Gyrus	brain
20	chr5:152014000-152014800	Enhancers	Fetal Kidney	kidney
21	chr5:152014000-152015000	Enhancers	Brain Cingulate Gyrus	brain
22	chr5:152014000-152015000	Enhancers	Brain Substantia Nigra	brain
23	chr5:152014200-152015200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr5:152014400-152014800	Enhancers	Right Ventricle	heart
25	chr5:152014400-152015000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr5:152014600-152014800	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr5:152014600-152018400	Weak transcription	Adipose Nuclei	Adipose

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