Variant report

Variant	rs10042517
Chromosome Location	chr5:151981919-151981920
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10036638	1.00[AMR][1000 genomes]
rs10036955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10037723	1.00[AMR][1000 genomes]
rs10056536	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10062210	1.00[AMR][1000 genomes]
rs10065883	1.00[AMR][1000 genomes]
rs10066577	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10067499	0.81[AFR][1000 genomes]
rs10078553	1.00[AFR][1000 genomes]
rs11950689	1.00[AMR][1000 genomes]
rs11956531	1.00[AMR][1000 genomes]
rs28407304	1.00[AMR][1000 genomes]
rs28730269	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023676	chr5:151979253-152925064	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv537927	chr5:151979253-152925064	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151975600-151985800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:151980800-151982400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr5:151981000-151982000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:151981200-151982000	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr5:151981800-151982400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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