Variant report

Variant	rs10065883
Chromosome Location	chr5:152030459-152030460
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10036638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10036955	1.00[AMR][1000 genomes]
rs10037723	1.00[AMR][1000 genomes]
rs10042517	1.00[AMR][1000 genomes]
rs10056536	1.00[AMR][1000 genomes]
rs10062210	1.00[AMR][1000 genomes]
rs10066577	1.00[AMR][1000 genomes]
rs11950689	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11956531	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28407304	1.00[AMR][1000 genomes]
rs28730269	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023676	chr5:151979253-152925064	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv537927	chr5:151979253-152925064	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv5074	chr5:152010691-152055779	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:152028600-152031400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr5:152030000-152030600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr5:152030000-152030800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:152030200-152031200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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