Variant report

Variant	rs10037462
Chromosome Location	chr5:54073868-54073869
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10045193	1.00[AMR][1000 genomes]
rs10065443	1.00[AMR][1000 genomes]
rs10075204	1.00[AMR][1000 genomes]
rs10075516	1.00[AMR][1000 genomes]
rs10213818	1.00[AMR][1000 genomes]
rs13353863	1.00[AMR][1000 genomes]
rs13356362	1.00[AMR][1000 genomes]
rs13359248	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1560168	1.00[AMR][1000 genomes]
rs28585462	1.00[AMR][1000 genomes]
rs6861370	1.00[AMR][1000 genomes]
rs6862424	1.00[AMR][1000 genomes]
rs6880497	1.00[AMR][1000 genomes]
rs7708519	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880717	chr5:54025701-54106378	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830300	chr5:54056300-54257344	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:54068400-54074800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr5:54071400-54074600	Weak transcription	NHDF-Ad	bronchial
3	chr5:54071400-54080800	Weak transcription	Primary B cells from cord blood	blood
4	chr5:54072800-54074800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:54073000-54097600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:54073400-54074800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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