Variant report

Variant	rs6880497
Chromosome Location	chr5:54137819-54137820
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10037462	1.00[AMR][1000 genomes]
rs10045193	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10065443	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10075204	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10075516	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10213818	1.00[AMR][1000 genomes]
rs13353863	1.00[AMR][1000 genomes]
rs13356362	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13359248	1.00[AMR][1000 genomes]
rs1560168	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28585462	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6861370	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6862424	1.00[AMR][1000 genomes]
rs7708519	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830300	chr5:54056300-54257344	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3358092	chr5:54077828-54189150	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:54117200-54138000	Weak transcription	Aorta	Aorta
2	chr5:54131000-54140800	Weak transcription	Adipose Nuclei	Adipose
3	chr5:54132000-54140800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:54133400-54138400	Weak transcription	NHLF	lung
5	chr5:54133800-54140600	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr5:54134800-54140200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr5:54135000-54140000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:54135000-54140400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr5:54135800-54140800	Weak transcription	Fetal Intestine Large	intestine
10	chr5:54136000-54140800	Weak transcription	Liver	Liver
11	chr5:54137200-54138000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr5:54137200-54140800	Weak transcription	Primary B cells from peripheral blood	blood
13	chr5:54137600-54140200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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