Variant report

Variant	rs13353863
Chromosome Location	chr5:54118833-54118834
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10037462	1.00[AMR][1000 genomes]
rs10045193	1.00[AMR][1000 genomes]
rs10065443	1.00[AMR][1000 genomes]
rs10075204	1.00[AMR][1000 genomes]
rs10075516	1.00[AMR][1000 genomes]
rs10213818	1.00[AMR][1000 genomes]
rs13356362	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs13359248	1.00[AMR][1000 genomes]
rs1560168	1.00[AMR][1000 genomes]
rs28585462	1.00[AMR][1000 genomes]
rs6861370	1.00[AMR][1000 genomes]
rs6862424	1.00[AMR][1000 genomes]
rs6880497	1.00[AMR][1000 genomes]
rs7708519	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830300	chr5:54056300-54257344	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3358092	chr5:54077828-54189150	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:54115400-54121200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr5:54115800-54119800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr5:54116000-54121000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr5:54116600-54119200	Weak transcription	NHDF-Ad	bronchial
5	chr5:54117000-54119600	Weak transcription	Osteobl	bone
6	chr5:54117000-54119800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:54117200-54138000	Weak transcription	Aorta	Aorta
8	chr5:54117600-54126800	Weak transcription	NHLF	lung
9	chr5:54117800-54121200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr5:54118000-54119400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr5:54118000-54126200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr5:54118000-54128600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr5:54118400-54121000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr5:54118600-54121200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr5:54118600-54123200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr5:54118600-54129200	Weak transcription	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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