Variant report
| Variant | rs10038709 |
|---|---|
| Chromosome Location | chr5:70721938-70721939 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10057258 | 0.84[ASN][1000 genomes] |
| rs10058316 | 0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs10060383 | 0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs10079014 | 0.83[ASN][1000 genomes] |
| rs1017225 | 0.83[ASN][1000 genomes] |
| rs10213992 | 0.85[EUR][1000 genomes] |
| rs10942288 | 0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10942548 | 0.81[ASN][1000 genomes] |
| rs11739723 | 0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12187886 | 0.85[ASN][1000 genomes] |
| rs13169095 | 0.84[ASN][1000 genomes] |
| rs13182226 | 0.81[ASN][1000 genomes] |
| rs13183892 | 0.84[ASN][1000 genomes] |
| rs16871757 | 0.85[ASN][1000 genomes] |
| rs1990996 | 0.84[ASN][1000 genomes] |
| rs2059196 | 0.83[ASN][1000 genomes] |
| rs4602607 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4703987 | 0.87[ASN][1000 genomes] |
| rs55884527 | 0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs67735897 | 0.87[ASN][1000 genomes] |
| rs6872978 | 0.87[ASN][1000 genomes] |
| rs7380012 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7443752 | 0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7449303 | 0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs875136 | 0.88[ASN][1000 genomes] |
| rs9885334 | 0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1034703 | chr5:70391173-70995695 | Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 28 gene(s) | inside rSNPs | diseases |
| 2 | esv1850052 | chr5:70674583-70745387 | Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv528571 | chr5:70679626-70767269 | Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 4 | nsv964892 | chr5:70703111-70745996 | Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:70721400-70722000 | Enhancers | Fetal Heart | heart |
