Variant report

Variant	rs4602607
Chromosome Location	chr5:70739327-70739328
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10038709	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10057258	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10058316	0.83[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs10060383	0.84[ASN][1000 genomes]
rs10079014	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1017225	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10942288	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10942548	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11739723	0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs12187886	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12652916	0.88[EUR][1000 genomes]
rs13169095	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13182226	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13183892	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs156756	0.89[EUR][1000 genomes]
rs16871757	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1990996	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2059196	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs276589	0.89[EUR][1000 genomes]
rs277941	0.82[EUR][1000 genomes]
rs277946	0.89[EUR][1000 genomes]
rs277947	0.88[EUR][1000 genomes]
rs279289	0.89[EUR][1000 genomes]
rs3761966	0.89[EUR][1000 genomes]
rs388918	0.82[EUR][1000 genomes]
rs411050	0.82[EUR][1000 genomes]
rs421128	0.89[EUR][1000 genomes]
rs457889	0.82[EUR][1000 genomes]
rs458829	0.82[EUR][1000 genomes]
rs461942	0.82[EUR][1000 genomes]
rs462534	0.82[EUR][1000 genomes]
rs464639	0.82[EUR][1000 genomes]
rs467880	0.81[EUR][1000 genomes]
rs467883	0.82[EUR][1000 genomes]
rs468010	0.82[EUR][1000 genomes]
rs468796	0.82[EUR][1000 genomes]
rs4703987	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4704050	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55884527	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs561139	0.89[EUR][1000 genomes]
rs617876	0.82[EUR][1000 genomes]
rs67735897	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6872978	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7380012	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7443752	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7449303	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs875136	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9885334	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034703	chr5:70391173-70995695	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	esv1850052	chr5:70674583-70745387	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv528571	chr5:70679626-70767269	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv964892	chr5:70703111-70745996	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv882176	chr5:70738250-70860665	Genic enhancers Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:70737800-70741800	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr5:70738800-70742800	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr5:70739000-70739800	Weak transcription	Liver	Liver

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