Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BDP1-3	chr5:70717124-70717292	NONHSAT102022
2	lnc-BDP1-3	chr5:70717124-70717292	NONHSAT102023
3	lnc-BDP1-3	chr5:70717124-70717292	NONHSAT102024
4	lnc-BDP1-3	chr5:70717124-70717292	NONHSAT102025

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10038709	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10057258	0.80[ASN][1000 genomes]
rs10058316	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10060383	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10213992	0.87[EUR][1000 genomes]
rs10942288	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11739723	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12187886	0.81[ASN][1000 genomes]
rs13169095	0.80[ASN][1000 genomes]
rs13183892	0.80[ASN][1000 genomes]
rs16871757	0.81[ASN][1000 genomes]
rs1990996	0.80[ASN][1000 genomes]
rs4602607	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4703987	0.83[ASN][1000 genomes]
rs67735897	0.83[ASN][1000 genomes]
rs6872978	0.83[ASN][1000 genomes]
rs7380012	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7443752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7449303	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs875136	0.84[ASN][1000 genomes]
rs9885334	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034703	chr5:70391173-70995695	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	esv1850052	chr5:70674583-70745387	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv528571	chr5:70679626-70767269	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv964892	chr5:70703111-70745996	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:70702000-70717400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:70702400-70717600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr5:70714800-70717400	Weak transcription	Liver	Liver
4	chr5:70715600-70718000	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr5:70715800-70718000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr5:70715800-70718200	Enhancers	H1 Cell Line	embryonic stem cell
7	chr5:70716000-70718400	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr5:70716400-70718000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr5:70716400-70718400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr5:70716400-70718400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr5:70716800-70718000	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr5:70717000-70717200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
13	chr5:70717000-70718200	Enhancers	H9 Cell Line	embryonic stem cell

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