Variant report

Variant	rs10040128
Chromosome Location	chr5:108032971-108032972
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12719098	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13169679	0.81[EUR][1000 genomes]
rs13169987	0.81[EUR][1000 genomes]
rs2940517	0.80[EUR][1000 genomes]
rs34251389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34825344	0.81[EUR][1000 genomes]
rs35710353	0.81[EUR][1000 genomes]
rs7707525	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs869287	0.80[EUR][1000 genomes]
rs9326743	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv980959	chr5:108023194-108043010	Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108007000-108034800	Weak transcription	Right Atrium	heart
2	chr5:108024400-108033000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:108032400-108033600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr5:108032400-108033600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr5:108032600-108033400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr5:108032600-108033400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr5:108032600-108033600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr5:108032800-108033400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr5:108032800-108033400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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