Variant report

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10040128	0.80[EUR][1000 genomes]
rs10063928	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12719098	0.82[EUR][1000 genomes]
rs13169679	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13169987	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1355079	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2940517	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2940518	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34251389	0.80[EUR][1000 genomes]
rs34825344	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35710353	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7707525	0.87[EUR][1000 genomes]
rs9326743	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1024076	chr5:107991426-108028223	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1034158	chr5:107995509-108018395	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107990000-108006200	Weak transcription	Fetal Heart	heart
2	chr5:107996000-107998400	Enhancers	Hela-S3	cervix
3	chr5:107996000-107999000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:107996200-107998000	Enhancers	HUVEC	blood vessel
5	chr5:107996400-107997400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr5:107996400-107997600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr5:107996400-107999000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr5:107996600-107997400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr5:107996600-107997600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr5:107996600-107997600	Enhancers	NHLF	lung
11	chr5:107996600-107997800	Enhancers	NHDF-Ad	bronchial
12	chr5:107996600-107998000	Enhancers	Pancreas	Pancrea
13	chr5:107996800-107998000	Enhancers	Muscle Satellite Cultured Cells	--
14	chr5:107997000-107997400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr5:107997000-107997400	Enhancers	HepG2	liver
16	chr5:107997000-107997600	Enhancers	Liver	Liver
17	chr5:107997000-107997600	Enhancers	NH-A	brain
18	chr5:107997200-107997400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr5:107997200-107997800	Enhancers	NHEK	skin
20	chr5:107997200-107997800	Enhancers	Osteobl	bone

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