Variant report

Variant	rs9326743
Chromosome Location	chr5:107996787-107996788
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10040128	0.80[EUR][1000 genomes]
rs10063928	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12719098	0.82[EUR][1000 genomes]
rs13169679	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13169987	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1355079	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2940517	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2940518	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34251389	0.80[EUR][1000 genomes]
rs34825344	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35710353	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6898473	1.00[YRI][hapmap]
rs7707525	0.87[EUR][1000 genomes]
rs869287	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1024076	chr5:107991426-108028223	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1034158	chr5:107995509-108018395	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107990000-108006200	Weak transcription	Fetal Heart	heart
2	chr5:107992200-107997000	Weak transcription	NH-A	brain
3	chr5:107992600-107997200	Weak transcription	NHEK	skin
4	chr5:107995400-107997000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:107995800-107996800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:107995800-107996800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr5:107995800-107997000	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr5:107995800-107997200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr5:107996000-107998400	Enhancers	Hela-S3	cervix
10	chr5:107996000-107999000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:107996200-107998000	Enhancers	HUVEC	blood vessel
12	chr5:107996400-107997400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr5:107996400-107997600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr5:107996400-107999000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr5:107996600-107997000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr5:107996600-107997000	Enhancers	Right Atrium	heart
17	chr5:107996600-107997400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr5:107996600-107997600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr5:107996600-107997600	Enhancers	NHLF	lung
20	chr5:107996600-107997800	Enhancers	NHDF-Ad	bronchial
21	chr5:107996600-107998000	Enhancers	Pancreas	Pancrea

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