Variant report

Variant	rs1004212
Chromosome Location	chr14:79181226-79181227
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11159375	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11845601	0.93[CEU][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.85[MKK][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11846885	0.93[CEU][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11847360	0.88[ASW][hapmap];0.93[CEU][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];0.86[MEX][hapmap];0.92[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7159717	0.84[ASN][1000 genomes]
rs73317933	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8016454	0.93[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs1004212	PROX2	cis	cerebellum	SCAN
rs1004212	VASH1	cis	parietal	SCAN
rs1004212	PGF	cis	cerebellum	SCAN
rs1004212	C14orf4	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79176000-79189000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr14:79176600-79188600	Weak transcription	Brain Anterior Caudate	brain
3	chr14:79177000-79188400	Weak transcription	Brain Angular Gyrus	brain
4	chr14:79177200-79187400	Weak transcription	Brain Germinal Matrix	brain
5	chr14:79177200-79188000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr14:79181000-79181600	Strong transcription	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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