Variant report

Variant	rs11845601
Chromosome Location	chr14:79191013-79191014
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1004212	0.93[CEU][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.85[MKK][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11159375	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11846885	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11847360	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7146256	1.00[JPT][hapmap]
rs73317933	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8016454	1.00[CEU][hapmap];0.95[EUR][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs11845601	VASH1	cis	parietal	SCAN
rs11845601	PROX2	cis	cerebellum	SCAN
rs11845601	C14orf4	cis	cerebellum	SCAN
rs11845601	PGF	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79187600-79192400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr14:79188800-79191200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr14:79189200-79191200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr14:79189400-79191200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr14:79189400-79198200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr14:79189600-79193600	Weak transcription	Brain Angular Gyrus	brain
7	chr14:79190000-79191200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr14:79190000-79191200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr14:79190000-79200200	Weak transcription	Brain Inferior Temporal Lobe	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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