Variant report

Variant	rs8016454
Chromosome Location	chr14:79176687-79176688
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1004212	0.93[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11159375	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11845601	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs11846885	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs11847360	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7159717	0.93[ASN][1000 genomes]
rs73317933	0.95[EUR][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79165000-79176800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr14:79165000-79181000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr14:79175000-79177600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr14:79175600-79177000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr14:79175600-79177200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:79175600-79177200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr14:79175800-79176800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr14:79175800-79177200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:79175800-79177200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr14:79175800-79178000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr14:79176000-79189000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr14:79176200-79177000	Enhancers	Brain Angular Gyrus	brain
13	chr14:79176200-79177000	Weak transcription	Fetal Kidney	kidney
14	chr14:79176200-79177200	Enhancers	Brain Germinal Matrix	brain
15	chr14:79176400-79177000	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr14:79176400-79177000	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr14:79176400-79177000	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr14:79176600-79176800	Enhancers	Brain Hippocampus Middle	brain
19	chr14:79176600-79188600	Weak transcription	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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