Variant report

Variant	rs10043303
Chromosome Location	chr5:111858541-111858542
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:111857753..111860186-chr5:111861145..111863385,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10037635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10043247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10043305	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10463632	0.97[ASN][1000 genomes]
rs10463633	0.95[ASN][1000 genomes]
rs10463635	0.97[ASN][1000 genomes]
rs10478092	0.99[ASN][1000 genomes]
rs11748606	1.00[ASN][1000 genomes]
rs11749490	0.99[ASN][1000 genomes]
rs11948701	0.86[AMR][1000 genomes]
rs11958362	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12659548	0.86[AMR][1000 genomes]
rs255702	0.99[ASN][1000 genomes]
rs341314	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs341316	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs341319	0.83[ASN][1000 genomes]
rs341328	0.83[ASN][1000 genomes]
rs341329	0.83[ASN][1000 genomes]
rs341330	0.83[ASN][1000 genomes]
rs341331	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs456491	0.82[ASN][1000 genomes]
rs463532	0.83[ASN][1000 genomes]
rs465644	0.83[ASN][1000 genomes]
rs55713401	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55818114	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56019374	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57909030	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58170444	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58636222	0.86[AMR][1000 genomes]
rs72789912	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72789914	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv882715	chr5:111836278-111894491	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
3	nsv882716	chr5:111848890-111894491	Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111855600-111859400	Enhancers	Primary B cells from cord blood	blood
2	chr5:111857800-111859200	Enhancers	Primary B cells from peripheral blood	blood
3	chr5:111858000-111860600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr5:111858400-111858600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
5	chr5:111858400-111859400	Flanking Active TSS	GM12878-XiMat	blood
6	chr5:111858400-111860600	Enhancers	Monocytes-CD14+_RO01746	blood

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