Variant report

Variant	rs56019374
Chromosome Location	chr5:111860003-111860004
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:111857753..111860186-chr5:111861145..111863385,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10037635	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10043247	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10043303	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10043305	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10463632	0.97[ASN][1000 genomes]
rs10463633	0.95[ASN][1000 genomes]
rs10463635	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10478092	0.99[ASN][1000 genomes]
rs11748606	1.00[ASN][1000 genomes]
rs11749490	0.99[ASN][1000 genomes]
rs11948057	0.84[AMR][1000 genomes]
rs11948701	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11958362	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12659548	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs255702	0.99[ASN][1000 genomes]
rs341314	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs341316	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs341319	0.83[ASN][1000 genomes]
rs341328	0.83[ASN][1000 genomes]
rs341329	0.83[ASN][1000 genomes]
rs341330	0.83[ASN][1000 genomes]
rs341331	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs456491	0.82[ASN][1000 genomes]
rs463532	0.83[ASN][1000 genomes]
rs465644	0.83[ASN][1000 genomes]
rs55713401	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55818114	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57909030	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58170444	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58636222	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72789912	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72789914	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv882715	chr5:111836278-111894491	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
3	nsv882716	chr5:111848890-111894491	Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111858000-111860600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr5:111858400-111860600	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr5:111858600-111860200	Enhancers	Sigmoid Colon	Sigmoid Colon
4	chr5:111858600-111860600	Enhancers	Adipose Nuclei	Adipose
5	chr5:111859000-111860200	Enhancers	Duodenum Mucosa	Duodenum
6	chr5:111859200-111860200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
7	chr5:111859400-111860400	Flanking Active TSS	Primary B cells from cord blood	blood
8	chr5:111859600-111860400	Enhancers	Spleen	Spleen
9	chr5:111859800-111860200	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
10	chr5:111859800-111861000	Flanking Active TSS	Primary B cells from peripheral blood	blood
11	chr5:111860000-111861000	Flanking Active TSS	GM12878-XiMat	blood

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