Variant report

Variant	rs10478092
Chromosome Location	chr5:111842929-111842930
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10037635	0.96[ASN][1000 genomes]
rs10043247	0.98[ASN][1000 genomes]
rs10043303	0.99[ASN][1000 genomes]
rs10043305	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10463632	0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10463633	0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10463635	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10463640	0.86[JPT][hapmap]
rs10515442	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs11748606	0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11749490	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11955149	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs11955894	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs11958362	0.99[ASN][1000 genomes]
rs255702	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs341309	0.92[JPT][hapmap]
rs341314	1.00[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs341316	0.84[ASN][1000 genomes]
rs341319	1.00[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs341328	1.00[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs341329	0.84[ASN][1000 genomes]
rs341330	1.00[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs341331	1.00[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs456145	0.86[JPT][hapmap]
rs456305	0.92[JPT][hapmap]
rs456491	1.00[CHB][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs458508	0.92[JPT][hapmap]
rs459290	0.86[JPT][hapmap]
rs459369	0.86[JPT][hapmap]
rs463532	1.00[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs463588	0.86[JPT][hapmap]
rs464453	0.86[JPT][hapmap]
rs465021	0.86[JPT][hapmap]
rs465644	1.00[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs55713401	0.96[ASN][1000 genomes]
rs55818114	0.96[ASN][1000 genomes]
rs56019374	0.99[ASN][1000 genomes]
rs57909030	0.93[ASN][1000 genomes]
rs58170444	0.98[ASN][1000 genomes]
rs72789912	0.99[ASN][1000 genomes]
rs72789914	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv882715	chr5:111836278-111894491	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111842800-111843200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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