Variant report
| Variant | rs10045422 |
|---|---|
| Chromosome Location | chr5:29853469-29853470 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:29852340..29854743-chr5:29859491..29862426,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:8)
| rs_ID | r2[population] |
|---|---|
| rs10068185 | 0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12697229 | 0.91[CEU][hapmap] |
| rs1582928 | 0.96[CEU][hapmap] |
| rs2115185 | 0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2288448 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4867227 | 0.87[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs7712093 | 1.00[CEU][hapmap];0.96[YRI][hapmap] |
| rs9292347 | 0.96[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3385368 | chr5:29548608-29910057 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
