Variant report

Variant	rs10045944
Chromosome Location	chr5:146991039-146991040
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:40505807..40507392-chr5:146989815..146991315,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131236	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10051794	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10515588	0.87[EUR][1000 genomes]
rs1106895	0.84[EUR][1000 genomes]
rs1159523	0.85[EUR][1000 genomes]
rs1347138	0.87[EUR][1000 genomes]
rs1529685	0.89[EUR][1000 genomes]
rs1529686	0.89[EUR][1000 genomes]
rs1529687	0.89[EUR][1000 genomes]
rs1529688	0.89[EUR][1000 genomes]
rs17096666	0.90[EUR][1000 genomes]
rs17106940	0.95[EUR][1000 genomes]
rs17106947	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17106977	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17106994	0.89[EUR][1000 genomes]
rs17106995	0.90[EUR][1000 genomes]
rs17107039	0.89[EUR][1000 genomes]
rs17107043	0.90[EUR][1000 genomes]
rs2116765	0.88[EUR][1000 genomes]
rs2116768	0.88[EUR][1000 genomes]
rs2116769	0.88[EUR][1000 genomes]
rs2304036	0.91[EUR][1000 genomes]
rs34100034	0.91[EUR][1000 genomes]
rs35502493	0.97[EUR][1000 genomes]
rs3763093	0.95[EUR][1000 genomes]
rs3763094	0.95[EUR][1000 genomes]
rs3765006	0.89[EUR][1000 genomes]
rs4382156	0.89[EUR][1000 genomes]
rs4382157	0.90[EUR][1000 genomes]
rs4577681	0.88[EUR][1000 genomes]
rs4635925	0.87[EUR][1000 genomes]
rs4705176	0.93[AFR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4705181	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55851807	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56295956	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56384964	0.96[EUR][1000 genomes]
rs57061855	0.89[EUR][1000 genomes]
rs58595614	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59225792	0.89[EUR][1000 genomes]
rs61508445	0.87[EUR][1000 genomes]
rs6580478	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6580480	0.98[EUR][1000 genomes]
rs6860404	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6887481	0.87[EUR][1000 genomes]
rs6892958	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73268153	0.89[EUR][1000 genomes]
rs73268172	0.90[EUR][1000 genomes]
rs7380570	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7704474	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7705148	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7706575	0.88[EUR][1000 genomes]
rs7711029	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7711042	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7725758	0.89[EUR][1000 genomes]
rs7729949	0.89[EUR][1000 genomes]
rs8180519	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8180520	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9325047	0.87[EUR][1000 genomes]
rs9686194	0.91[EUR][1000 genomes]
rs9686196	0.91[EUR][1000 genomes]
rs9686961	0.89[EUR][1000 genomes]
rs981644	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9918128	0.89[EUR][1000 genomes]
rs999953	0.98[EUR][1000 genomes]

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146957000-146996200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr5:146957800-147038000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr5:146970600-146993000	Weak transcription	Brain Angular Gyrus	brain
4	chr5:146973600-146994800	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr5:146974800-146992600	Weak transcription	Fetal Lung	lung
6	chr5:146976200-146991200	Weak transcription	Primary T cells from cord blood	blood
7	chr5:146977400-147012200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr5:146987800-147001000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:146988000-147015000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr5:146988200-146998200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr5:146988400-146993000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr5:146988400-147000400	Strong transcription	Cortex derived primary cultured neurospheres	brain
13	chr5:146989000-147003000	Weak transcription	Fetal Muscle Trunk	muscle
14	chr5:146989400-146992400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr5:146989600-146991400	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr5:146989600-146991400	Strong transcription	Brain Inferior Temporal Lobe	brain
17	chr5:146989600-146992200	Strong transcription	Brain Substantia Nigra	brain
18	chr5:146989800-146991800	Strong transcription	Brain Cingulate Gyrus	brain
19	chr5:146989800-146992000	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr5:146990000-146991600	Strong transcription	Fetal Brain Female	brain
21	chr5:146990000-146991800	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr5:146990000-146991800	Strong transcription	Brain Anterior Caudate	brain
23	chr5:146990000-146991800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr5:146990000-146992400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr5:146990000-146992600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr5:146990200-146991400	Strong transcription	Fetal Stomach	stomach
27	chr5:146990200-146991600	Genic enhancers	HUES6 Cell Line	embryonic stem cell
28	chr5:146990200-146991600	Strong transcription	Brain Germinal Matrix	brain
29	chr5:146990200-147015400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr5:146990400-146991400	Genic enhancers	H1 Cell Line	embryonic stem cell
31	chr5:146990400-146991600	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr5:146990400-146991800	Strong transcription	Brain Hippocampus Middle	brain
33	chr5:146990400-146992400	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr5:146990400-146992400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr5:146990400-146992400	Strong transcription	Fetal Brain Male	brain
36	chr5:146990400-147004000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr5:146990600-146991200	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr5:146990600-146991400	Strong transcription	Stomach Smooth Muscle	stomach
39	chr5:146990600-146992200	Strong transcription	Primary hematopoietic stem cells	blood
40	chr5:146990600-147022600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr5:146990800-146991200	Weak transcription	Fetal Thymus	thymus
42	chr5:146990800-146991600	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr5:146990800-146991800	Strong transcription	Thymus	Thymus
44	chr5:146990800-146992200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr5:146990800-146994400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr5:146990800-147008600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr5:146991000-146991400	Enhancers	H9 Cell Line	embryonic stem cell
48	chr5:146991000-146991800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr5:146991000-146996000	Weak transcription	Duodenum Smooth Muscle	Duodenum

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