Variant report

Variant	rs7380570
Chromosome Location	chr5:146952758-146952759
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10045944	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10051794	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10515588	0.87[EUR][1000 genomes]
rs1106895	0.84[EUR][1000 genomes]
rs1159523	0.80[CEU][hapmap];0.85[EUR][1000 genomes]
rs1347138	0.87[EUR][1000 genomes]
rs1529685	0.89[EUR][1000 genomes]
rs1529686	0.89[EUR][1000 genomes]
rs1529687	0.89[EUR][1000 genomes]
rs1529688	0.89[EUR][1000 genomes]
rs17096666	0.90[EUR][1000 genomes]
rs17106940	0.95[EUR][1000 genomes]
rs17106947	0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17106977	0.93[EUR][1000 genomes]
rs17106994	0.89[EUR][1000 genomes]
rs17106995	0.90[EUR][1000 genomes]
rs17107039	0.87[CEU][hapmap];0.89[EUR][1000 genomes]
rs17107043	0.87[CEU][hapmap];0.90[EUR][1000 genomes]
rs2116765	0.87[CEU][hapmap];0.88[EUR][1000 genomes]
rs2116768	0.88[EUR][1000 genomes]
rs2116769	0.88[EUR][1000 genomes]
rs2304036	0.87[CEU][hapmap];0.91[EUR][1000 genomes]
rs34100034	0.91[EUR][1000 genomes]
rs35502493	0.97[EUR][1000 genomes]
rs3763093	0.95[EUR][1000 genomes]
rs3763094	0.95[EUR][1000 genomes]
rs3765006	0.89[EUR][1000 genomes]
rs4382156	0.89[EUR][1000 genomes]
rs4382157	0.90[EUR][1000 genomes]
rs4577681	0.88[EUR][1000 genomes]
rs4635925	0.87[EUR][1000 genomes]
rs4705176	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4705181	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55851807	0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56295956	0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56384964	0.96[EUR][1000 genomes]
rs57061855	0.89[EUR][1000 genomes]
rs58595614	0.99[EUR][1000 genomes]
rs59225792	0.89[EUR][1000 genomes]
rs61508445	0.87[EUR][1000 genomes]
rs6580478	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6580480	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6860404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6887481	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs6892958	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73268153	0.89[EUR][1000 genomes]
rs73268172	0.90[EUR][1000 genomes]
rs7704474	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7705148	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7706575	0.88[EUR][1000 genomes]
rs7711029	0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7711042	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7725758	0.89[EUR][1000 genomes]
rs7729949	0.89[EUR][1000 genomes]
rs8180519	0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8180520	0.90[EUR][1000 genomes]
rs9325047	0.87[EUR][1000 genomes]
rs9686194	0.91[EUR][1000 genomes]
rs9686196	0.91[EUR][1000 genomes]
rs9686961	0.89[EUR][1000 genomes]
rs981644	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9918128	0.89[EUR][1000 genomes]
rs999953	0.93[CEU][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146945600-146957400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr5:146946800-146956800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr5:146948800-146953600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:146948800-146954200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:146949400-146953400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr5:146950800-146954800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr5:146950800-146955000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr5:146950800-146956200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr5:146951000-146955000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr5:146951000-146955200	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr5:146951600-146954800	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr5:146951600-146955000	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr5:146951800-146955000	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr5:146952200-146953600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr5:146952200-146953800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr5:146952200-146954200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr5:146952200-146955000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr5:146952400-146953200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:146952400-146954600	Enhancers	H1 Cell Line	embryonic stem cell
20	chr5:146952400-146954600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr5:146952400-146954800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links