Variant report

Variant	rs1347138
Chromosome Location	chr5:147026445-147026446
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10045944	0.87[EUR][1000 genomes]
rs10051794	0.87[EUR][1000 genomes]
rs10452517	0.86[AFR][1000 genomes]
rs10452518	0.86[AFR][1000 genomes]
rs10452530	0.86[AFR][1000 genomes]
rs10515588	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1106894	0.88[ASN][1000 genomes]
rs1106895	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1159523	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12657682	0.86[AFR][1000 genomes]
rs12658788	0.81[AFR][1000 genomes]
rs12658834	0.83[AFR][1000 genomes]
rs13158025	0.86[AFR][1000 genomes]
rs13162410	0.85[AFR][1000 genomes]
rs1347137	0.91[AFR][1000 genomes]
rs1347139	0.94[AFR][1000 genomes]
rs1347140	0.91[AFR][1000 genomes]
rs1529685	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1529686	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1529687	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1529688	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17096666	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17106940	0.82[EUR][1000 genomes]
rs17106947	0.86[EUR][1000 genomes]
rs17106977	0.92[EUR][1000 genomes]
rs17106994	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17106995	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17107039	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17107043	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2053051	0.86[AFR][1000 genomes]
rs2116765	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2116766	0.85[AFR][1000 genomes]
rs2116768	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2116769	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2304036	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34100034	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34147729	0.82[AFR][1000 genomes]
rs35416673	0.90[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs35502493	0.84[EUR][1000 genomes]
rs35542336	0.83[AFR][1000 genomes]
rs36119468	0.88[ASN][1000 genomes]
rs3763093	0.84[EUR][1000 genomes]
rs3763094	0.84[EUR][1000 genomes]
rs3765006	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4147461	0.87[AFR][1000 genomes]
rs4147462	0.87[AFR][1000 genomes]
rs4147463	0.87[AFR][1000 genomes]
rs4147464	0.87[AFR][1000 genomes]
rs4382156	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4382157	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4489050	0.86[AFR][1000 genomes]
rs4577681	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4635925	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4705176	0.82[EUR][1000 genomes]
rs4705181	0.87[EUR][1000 genomes]
rs4705188	0.81[AFR][1000 genomes]
rs55851807	0.86[EUR][1000 genomes]
rs56295956	0.86[EUR][1000 genomes]
rs56384964	0.83[EUR][1000 genomes]
rs57061855	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58595614	0.86[EUR][1000 genomes]
rs59225792	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61508445	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6580478	0.87[EUR][1000 genomes]
rs6580480	0.85[EUR][1000 genomes]
rs6859329	0.89[AFR][1000 genomes]
rs6860404	0.87[EUR][1000 genomes]
rs6860455	0.81[AFR][1000 genomes]
rs6862046	0.83[AFR][1000 genomes]
rs6883287	0.87[AFR][1000 genomes]
rs6887481	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6892958	0.85[EUR][1000 genomes]
rs6896560	0.87[AFR][1000 genomes]
rs73268153	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73268170	0.93[AFR][1000 genomes]
rs73268172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7380570	0.87[EUR][1000 genomes]
rs7704474	0.87[EUR][1000 genomes]
rs7705148	0.87[EUR][1000 genomes]
rs7706575	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7709287	0.87[AFR][1000 genomes]
rs7711029	0.86[EUR][1000 genomes]
rs7711042	0.87[EUR][1000 genomes]
rs7725758	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7729949	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7735403	0.81[AFR][1000 genomes]
rs8180519	0.86[EUR][1000 genomes]
rs9325047	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9325048	0.83[AFR][1000 genomes]
rs9686194	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9686196	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9686961	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs981644	0.87[EUR][1000 genomes]
rs9918128	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs999953	0.85[EUR][1000 genomes]

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146957800-147038000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr5:147009400-147027200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:147009400-147033200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:147009800-147051200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr5:147010800-147028600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:147013000-147027400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr5:147013000-147030200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
8	chr5:147013000-147038400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr5:147014000-147029800	Strong transcription	HUES48 Cell Line	embryonic stem cell
10	chr5:147014000-147030400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:147014200-147030400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr5:147015000-147030000	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr5:147015200-147029000	Strong transcription	H1 Cell Line	embryonic stem cell
14	chr5:147015400-147050000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr5:147016400-147052400	Weak transcription	Primary B cells from cord blood	blood
16	chr5:147016600-147037400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr5:147016600-147037800	Weak transcription	Fetal Stomach	stomach
18	chr5:147016600-147038200	Weak transcription	Brain Angular Gyrus	brain
19	chr5:147016600-147047400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr5:147020000-147037000	Weak transcription	Fetal Brain Male	brain
21	chr5:147021400-147037200	Weak transcription	Fetal Brain Female	brain
22	chr5:147021400-147042800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr5:147022800-147037600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr5:147023200-147037600	Weak transcription	Thymus	Thymus
25	chr5:147023200-147037800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr5:147023400-147036800	Weak transcription	Brain Germinal Matrix	brain
27	chr5:147023800-147029000	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr5:147023800-147037400	Weak transcription	Fetal Lung	lung
29	chr5:147024200-147028200	Weak transcription	Primary hematopoietic stem cells	blood
30	chr5:147024200-147038400	Weak transcription	Brain Cingulate Gyrus	brain
31	chr5:147024600-147027800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr5:147024600-147035600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr5:147024600-147037800	Weak transcription	Brain Anterior Caudate	brain
34	chr5:147024800-147037600	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr5:147025000-147028200	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr5:147025200-147041200	Weak transcription	Brain Hippocampus Middle	brain
37	chr5:147025200-147053000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr5:147025400-147027000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr5:147025400-147027600	Weak transcription	Primary T cells from cord blood	blood
40	chr5:147025400-147034800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr5:147025400-147037400	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr5:147025400-147037400	Weak transcription	Fetal Thymus	thymus
43	chr5:147025400-147038200	Weak transcription	Brain Substantia Nigra	brain
44	chr5:147025400-147038400	Weak transcription	Stomach Smooth Muscle	stomach
45	chr5:147025400-147040400	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr5:147025600-147027000	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr5:147025600-147027600	Weak transcription	HepG2	liver
48	chr5:147025600-147031000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr5:147025800-147028400	Enhancers	Liver	Liver
50	chr5:147026000-147027400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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