Variant report

Variant	rs34147729
Chromosome Location	chr5:147039064-147039065
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10452517	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10452518	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10452530	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12657682	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12658788	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12658834	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13158025	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13162410	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1347137	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1347138	0.82[AFR][1000 genomes]
rs1347139	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1347140	0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs17106977	0.85[ASN][1000 genomes]
rs17107043	0.81[AFR][1000 genomes]
rs2053051	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35246628	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35416673	0.92[AFR][1000 genomes]
rs35542336	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4147461	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4147462	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4147463	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4147464	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4489050	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4705188	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6859329	0.90[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6860455	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6862046	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6883287	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6896560	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73268170	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs73268172	0.82[AFR][1000 genomes]
rs7709287	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7735403	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9325048	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147009800-147051200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr5:147015400-147050000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr5:147016400-147052400	Weak transcription	Primary B cells from cord blood	blood
4	chr5:147016600-147047400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr5:147021400-147042800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr5:147025200-147041200	Weak transcription	Brain Hippocampus Middle	brain
7	chr5:147025200-147053000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr5:147025400-147040400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr5:147035000-147039400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr5:147035800-147052800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr5:147036400-147042000	Strong transcription	Cortex derived primary cultured neurospheres	brain
12	chr5:147036800-147039200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr5:147037200-147041400	Strong transcription	Fetal Brain Female	brain
14	chr5:147037200-147046600	Weak transcription	Fetal Intestine Small	intestine
15	chr5:147037400-147039200	Strong transcription	Fetal Lung	lung
16	chr5:147037400-147039400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr5:147037400-147040600	Strong transcription	Fetal Thymus	thymus
18	chr5:147037400-147040800	Strong transcription	Brain Inferior Temporal Lobe	brain
19	chr5:147037600-147039400	Strong transcription	Thymus	Thymus
20	chr5:147037600-147039600	Strong transcription	Primary T cells fromperipheralblood	blood
21	chr5:147037600-147039800	Enhancers	HepG2	liver
22	chr5:147037800-147040400	Weak transcription	Fetal Brain Male	brain
23	chr5:147037800-147041000	Strong transcription	Brain Anterior Caudate	brain
24	chr5:147037800-147041200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr5:147038000-147039200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr5:147038000-147041200	Strong transcription	Brain Germinal Matrix	brain
27	chr5:147038200-147039200	Genic enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr5:147038200-147039200	Genic enhancers	HUES64 Cell Line	embryonic stem cell
29	chr5:147038200-147039200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr5:147038200-147039400	Strong transcription	Brain Substantia Nigra	brain
31	chr5:147038200-147039800	Enhancers	Fetal Intestine Large	intestine
32	chr5:147038200-147044400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr5:147038200-147047800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr5:147038200-147048600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr5:147038400-147039200	Enhancers	Stomach Mucosa	stomach
36	chr5:147038400-147039200	Strong transcription	Stomach Smooth Muscle	stomach
37	chr5:147038400-147041000	Strong transcription	Brain Cingulate Gyrus	brain
38	chr5:147038600-147039200	Genic enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr5:147038600-147039200	Flanking Active TSS	Liver	Liver
40	chr5:147038600-147042000	Strong transcription	HUES48 Cell Line	embryonic stem cell
41	chr5:147038600-147042200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
42	chr5:147038800-147039200	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
43	chr5:147038800-147039200	Active TSS	Rectal Mucosa Donor 29	rectum
44	chr5:147038800-147039200	Active TSS	Rectal Mucosa Donor 31	rectum
45	chr5:147038800-147040200	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr5:147038800-147041600	Strong transcription	Primary hematopoietic stem cells	blood
47	chr5:147038800-147052200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr5:147038800-147053200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr5:147039000-147039200	Active TSS	Fetal Stomach	stomach
50	chr5:147039000-147039200	Active TSS	Gastric	stomach

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