Variant report

Variant	rs13162410
Chromosome Location	chr5:147038335-147038336
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10452517	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10452518	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10452530	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12657682	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12658788	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12658834	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13158025	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1347137	0.86[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1347138	0.85[AFR][1000 genomes]
rs1347139	0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1347140	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs17106977	0.86[ASN][1000 genomes]
rs17107043	0.84[AFR][1000 genomes]
rs2053051	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34147729	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35246628	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35416673	0.95[AFR][1000 genomes]
rs35542336	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4147461	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4147462	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4147463	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4147464	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4489050	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4705188	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6859329	0.93[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6860455	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6862046	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6883287	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6887481	0.83[AFR][1000 genomes]
rs6896560	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73268170	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs73268172	0.85[AFR][1000 genomes]
rs7709287	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7735403	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9325048	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147009800-147051200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr5:147013000-147038400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr5:147015400-147050000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr5:147016400-147052400	Weak transcription	Primary B cells from cord blood	blood
5	chr5:147016600-147047400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr5:147021400-147042800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr5:147024200-147038400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr5:147025200-147041200	Weak transcription	Brain Hippocampus Middle	brain
9	chr5:147025200-147053000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr5:147025400-147038400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr5:147025400-147040400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr5:147029800-147038600	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr5:147035000-147039400	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr5:147035800-147039000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr5:147035800-147052800	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr5:147036400-147042000	Strong transcription	Cortex derived primary cultured neurospheres	brain
17	chr5:147036800-147039200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr5:147037200-147041400	Strong transcription	Fetal Brain Female	brain
19	chr5:147037200-147046600	Weak transcription	Fetal Intestine Small	intestine
20	chr5:147037400-147039200	Strong transcription	Fetal Lung	lung
21	chr5:147037400-147039400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr5:147037400-147040600	Strong transcription	Fetal Thymus	thymus
23	chr5:147037400-147040800	Strong transcription	Brain Inferior Temporal Lobe	brain
24	chr5:147037600-147038400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr5:147037600-147038800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr5:147037600-147038800	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr5:147037600-147039000	Genic enhancers	H1 Cell Line	embryonic stem cell
28	chr5:147037600-147039000	Strong transcription	Primary T cells from cord blood	blood
29	chr5:147037600-147039000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr5:147037600-147039400	Strong transcription	Thymus	Thymus
31	chr5:147037600-147039600	Strong transcription	Primary T cells fromperipheralblood	blood
32	chr5:147037600-147039800	Enhancers	HepG2	liver
33	chr5:147037800-147038600	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr5:147037800-147038800	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr5:147037800-147038800	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr5:147037800-147038800	Weak transcription	Primary hematopoietic stem cells	blood
37	chr5:147037800-147038800	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr5:147037800-147038800	Strong transcription	Fetal Stomach	stomach
39	chr5:147037800-147039000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr5:147037800-147040400	Weak transcription	Fetal Brain Male	brain
41	chr5:147037800-147041000	Strong transcription	Brain Anterior Caudate	brain
42	chr5:147037800-147041200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr5:147038000-147038800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr5:147038000-147039200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr5:147038000-147041200	Strong transcription	Brain Germinal Matrix	brain
46	chr5:147038200-147038600	Enhancers	Liver	Liver
47	chr5:147038200-147038800	Enhancers	Gastric	stomach
48	chr5:147038200-147039000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
49	chr5:147038200-147039000	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
50	chr5:147038200-147039000	Strong transcription	Brain Angular Gyrus	brain

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